STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0729PFAM: NLPA lipoprotein; KEGG: bid:Bind_2455 NlpA lipoprotein. (276 aa)    
Predicted Functional Partners:
Xcel_0732
ABC transporter related protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Methionine importer (TC 3.A.1.24) family.
 
 0.998
Xcel_0733
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpi:Rpic_0791 binding-protein-dependent transport systems inner membrane component.
 
 0.998
Xcel_0251
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcu:BCAH820_0344 ABC transporter, permease protein.
 
 0.995
metN
ABC transporter related protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
 0.994
Xcel_0249
PFAM: NLPA lipoprotein; KEGG: bcb:BCB4264_A0360 putative ABC transporter, substrate-binding protein.
  
  
  0.976
Xcel_3001
O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: bha:BH2603 O-acetylhomoserine aminocarboxypropyltransferase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein.
  
    0.675
Xcel_0730
PFAM: protein of unknown function DUF1684; KEGG: smt:Smal_2753 protein of unknown function DUF1684.
  
    0.667
Xcel_0731
PFAM: protein of unknown function DUF1684; KEGG: ank:AnaeK_0098 protein of unknown function DUF1684.
  
    0.667
Xcel_0502
Ferredoxin--NADP(+) reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ade:Adeh_3296 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
   
    0.481
sucD
succinyl-CoA synthetase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
       0.435
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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