STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0747KEGG: aba:Acid345_2329 alpha-1,6-glucosidases, pullulanase-type; TIGRFAM: alpha-1,6-glucosidase, pullulanase-type; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; SMART: alpha amylase catalytic sub domain. (1891 aa)    
Predicted Functional Partners:
Xcel_2949
TIGRFAM: trehalose-phosphatase; PFAM: glycosyl transferase family 20; trehalose- phosphatase; KEGG: scl:sce0488 Alpha,alpha-trehalose-phosphate synthase (UDP-forming).
  
 
 0.857
Xcel_1881
1 4-alpha-glucan branching enzyme-like protein; KEGG: aba:Acid345_0241 malto-oligosyltrehalose trehalohydrolase.
 
  
 0.830
Xcel_2219
Glycogen/starch/alpha-glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
  
 
 0.811
glgC
Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
  
  
 0.801
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
  
 0.799
Xcel_2419
PFAM: aminoglycoside phosphotransferase; KEGG: bpt:Bpet2370 hypothetical protein.
 
 
 0.686
Xcel_1101
4-alpha-glucanotransferase; KEGG: rce:RC1_2119 probable maltokinase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77.
  
  
 0.666
Xcel_0382
KEGG: hypothetical protein.
   
    0.661
Xcel_1605
Hypothetical protein.
  
 
 0.641
Xcel_0744
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bpt:Bpet3362 HlyB/MsbA family ABC transporter.
   
   0.544
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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