STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0767Hypothetical protein; KEGG: GI17572 gene product from transcript GI17572- RA. (321 aa)    
Predicted Functional Partners:
Xcel_1078
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: ABC transporter substrate binding protein (proline/glycine/betaine).
  
    0.762
Xcel_0765
PFAM: protein of unknown function DUF1003; KEGG: pfl:PFL_4534 hypothetical protein.
       0.657
Xcel_0766
PFAM: MgtE intracellular region; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: gur:Gura_2041 MgtE intracellular region.
       0.598
Xcel_2360
PFAM: membrane-flanked domain; KEGG: xac:XAC2552 cell division protein.
 
    0.583
Xcel_2081
PFAM: membrane-flanked domain; KEGG: bha:BH1721 hypothetical protein.
 
    0.576
Xcel_0779
PFAM: UvrD/REP helicase; KEGG: mpo:Mpop_4135 UvrD/REP helicase.
  
     0.516
Xcel_2052
PFAM: CsbD family protein; KEGG: hypothetical protein.
  
  
 0.503
Xcel_2979
PFAM: membrane-flanked domain; KEGG: sal:Sala_3015 membrane-flanked domain- containing protein.
  
    0.497
Xcel_2981
PFAM: membrane-flanked domain; KEGG: sal:Sala_3015 membrane-flanked domain- containing protein.
  
    0.497
Xcel_0085
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mag:amb0333 anti-anti-sigma regulatory factor.
   
    0.485
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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