STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0776Hypothetical protein. (74 aa)    
Predicted Functional Partners:
whiB-5
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.708
whiB-4
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.529
Xcel_1262
Superfamily I DNA and RNA helicase-like protein; KEGG: bcb:BCB4264_A2823 UvrD/Rep helicase family protein.
  
     0.524
Xcel_1174
Hypothetical protein.
  
     0.521
Xcel_0779
PFAM: UvrD/REP helicase; KEGG: mpo:Mpop_4135 UvrD/REP helicase.
 
     0.465
clpS
ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
  
     0.439
Xcel_0780
PFAM: UvrD/REP helicase; KEGG: acr:Acry_0218 UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
 
     0.424
Xcel_0777
PFAM: filamentation induced by cAMP protein Fic; KEGG: shn:Shewana3_2962 filamentation induced by cAMP protein Fic.
       0.410
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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