STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0780PFAM: UvrD/REP helicase; KEGG: acr:Acry_0218 UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily. (1192 aa)    
Predicted Functional Partners:
Xcel_0779
PFAM: UvrD/REP helicase; KEGG: mpo:Mpop_4135 UvrD/REP helicase.
  
 0.976
Xcel_0786
PFAM: UvrD/REP helicase; HRDC domain protein; SMART: HRDC domain protein; KEGG: gsu:GSU3411 ATP-dependent DNA helicase PcrA, putative.
 
 
0.954
Xcel_0723
TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: bsu:BSU06610 ATP-dependent DNA helicase.
 
 
0.928
Xcel_0849
PFAM: TrwC relaxase; SMART: AAA ATPase; KEGG: tbd:Tbd_1686 putative ATP-dependent exoDNAse (exonuclease V) alpha subunit.
  
 
 0.776
Xcel_2336
PFAM: TrwC relaxase; KEGG: tbd:Tbd_1686 putative ATP-dependent exoDNAse (exonuclease V) alpha subunit.
  
 
 0.776
Xcel_0355
TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: gsu:GSU2230 DNA polymerase III, delta prime subunit.
 
   
 0.693
Xcel_2360
PFAM: membrane-flanked domain; KEGG: xac:XAC2552 cell division protein.
 
     0.678
Xcel_2407
Hypothetical protein; KEGG: ank:AnaeK_0563 thermosensitive mutation transmembrane protein, SuhR.
  
     0.648
Xcel_2004
KEGG: dar:Daro_1907 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; Excinuclease ABC C subunit domain protein; SMART: Exonuclease; Excinuclease ABC C subunit domain protein.
 
   
 0.625
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
 
   
 0.582
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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