STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0792PFAM: peptidase S16 lon domain protein; KEGG: bsu:BSU15050 hypothetical protein. (353 aa)    
Predicted Functional Partners:
Xcel_0791
Conserved hypothetical protein; KEGG: Phlpp; PH domain and leucine rich repeat protein phosphatase; K01090 protein phosphatase.
 
     0.719
Xcel_0793
PFAM: protein of unknown function UPF0182; KEGG: reh:H16_A1615 hypothetical membrane spanning protein.
       0.613
Xcel_2208
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: noc:Noc_2663 DNA polymerase III, delta subunit.
 
     0.525
Xcel_1900
Superfamily I DNA and RNA helicase-like protein; KEGG: bcz:BCZK2539 UvrD/Rep helicase family protein.
  
     0.405
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.