STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0794Phage transcriptional regulator, AlpA; TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; Prophage CP4-57 regulatory; KEGG: cak:Caul_2014 hypothetical protein. (80 aa)    
Predicted Functional Partners:
Xcel_0795
PFAM: integrase family protein; KEGG: bat:BAS3836 prophage LambdaBa02, site- specific recombinase phage integrase family protein protein; Belongs to the 'phage' integrase family.
 
     0.949
Xcel_1569
PFAM: integrase family protein; KEGG: bcy:Bcer98_2627 phage integrase family protein; Belongs to the 'phage' integrase family.
 
     0.782
Xcel_0844
PFAM: SAF domain protein; KEGG: xop:PXO_01713 periplasmic protease.
 
     0.617
Xcel_0797
Hypothetical protein.
 
     0.574
Xcel_0845
Hypothetical protein.
  
     0.572
Xcel_2348
Hypothetical protein.
 
     0.552
Xcel_1571
Hypothetical protein.
 
     0.551
Xcel_0838
PFAM: TadE family protein.
  
     0.493
Xcel_0840
PFAM: type II secretion system protein; KEGG: mlo:mlr6486 hypothetical protein.
  
     0.478
Xcel_0836
KEGG: ret:RHE_CH01044 hypothetical protein.
  
     0.442
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.