Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Xcel_0803KEGG: rce:RC1_3520 hypothetical protein. (208 aa)    
Predicted Functional Partners:
Xcel_0804
PFAM: regulatory protein MerR; KEGG: rec:RHECIAT_PB0000171 putative excisonase protein.
       0.781
Xcel_0847
KEGG: pde:Pden_1953 hypothetical protein.
  
     0.775
Xcel_2889
Putative RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; Prophage CP4-57 regulatory; KEGG: maq:Maqu_3385 DNA binding domain-containing protein.
 
    0.773
Xcel_0805
Type IV secretory pathway VirB4 protein-like protein; KEGG: rle:pRL70152 putative crown gall-like type IV secretion system protein.
       0.645
Xcel_0806
Hypothetical protein.
       0.645
Xcel_0800
Type IV secretory pathway VirD4 protein-like protein; KEGG: atc:AGR_L_58 component of type IV secretion system.
       0.620
Xcel_0801
Hypothetical protein.
       0.620
Xcel_0802
KEGG: baa:BXB0111 hypothetical protein.
       0.620
Xcel_1611
PFAM: N-formylglutamate amidohydrolase; KEGG: sil:SPO3282 N-formylglutamate amidohydrolase family protein.
  
     0.528
Xcel_0807
PFAM: peptidase A24A prepilin type IV; KEGG: bcm:Bcenmc03_0546 prepilin peptidase.
       0.513
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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