STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0806Hypothetical protein. (147 aa)    
Predicted Functional Partners:
Xcel_0805
Type IV secretory pathway VirB4 protein-like protein; KEGG: rle:pRL70152 putative crown gall-like type IV secretion system protein.
       0.773
Xcel_0803
KEGG: rce:RC1_3520 hypothetical protein.
       0.645
Xcel_0804
PFAM: regulatory protein MerR; KEGG: rec:RHECIAT_PB0000171 putative excisonase protein.
       0.645
Xcel_0807
PFAM: peptidase A24A prepilin type IV; KEGG: bcm:Bcenmc03_0546 prepilin peptidase.
       0.608
Xcel_0800
Type IV secretory pathway VirD4 protein-like protein; KEGG: atc:AGR_L_58 component of type IV secretion system.
       0.523
Xcel_0801
Hypothetical protein.
       0.523
Xcel_0802
KEGG: baa:BXB0111 hypothetical protein.
       0.523
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.