STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0844PFAM: SAF domain protein; KEGG: xop:PXO_01713 periplasmic protease. (218 aa)    
Predicted Functional Partners:
Xcel_0840
PFAM: type II secretion system protein; KEGG: mlo:mlr6486 hypothetical protein.
 
    0.959
Xcel_0841
PFAM: type II secretion system protein; KEGG: bbr:BB2099 hypothetical protein.
 
    0.959
Xcel_0843
Hypothetical protein.
 
    0.954
Xcel_3140
Protein serine/threonine phosphatase; PFAM: Stage II sporulation E family protein; ATP- binding region ATPase domain protein; SMART: protein phosphatase 2C domain protein; PAC repeat-containing protein; KEGG: gme:Gmet_2818 putative PAS/PAC sensor protein.
   
    0.951
Xcel_0845
Hypothetical protein.
 
     0.933
Xcel_0842
PFAM: type II secretion system protein E; KEGG: hne:HNE_1153 type II/IV secretion system protein.
 
    0.929
Xcel_0837
PFAM: TadE family protein; KEGG: cti:RALTA_B0191 conserved hypothetical protein; putative TadE-like.
 
    0.922
Xcel_0838
PFAM: TadE family protein.
 
    0.922
Xcel_0836
KEGG: ret:RHE_CH01044 hypothetical protein.
 
     0.907
Xcel_1263
PFAM: Stage II sporulation E family protein; response regulator receiver; SMART: response regulator receiver; protein phosphatase 2C domain protein; KEGG: gbm:Gbem_0731 response regulator receiver modulated serine phosphatase.
  
  
 0.721
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.