STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0870KEGG: hypothetical protein. (896 aa)    
Predicted Functional Partners:
Xcel_0481
KEGG: dds:Ddes_1656 proton-translocating NADH- quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I).
    
 
 0.871
Xcel_0869
TIGRFAM: peptidase S26B, signal peptidase; KEGG: bsu:BSU24630 type I signal peptidase.
  
    0.773
Xcel_0616
KEGG: hypothetical protein.
   
 
 0.734
Xcel_1312
Hypothetical protein; KEGG: met:M446_5885 adenylate/guanylate cyclase.
   
 
 0.734
Xcel_0142
PFAM: sulphate transporter; Xanthine/uracil/vitamin C permease; KEGG: yen:YE0973 putative membrane transport protein.
    
   0.702
Xcel_2086
PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; KEGG: wsu:WS0651 sulfate transporter sulfate transporter family protein.
    
   0.702
secY
Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
   0.624
Xcel_0695
Conserved hypothetical protein; KEGG: cti:RALTA_A0294 putative transmembrane cytochrome oxidase complex biogenesis factor.
    
   0.554
Xcel_1413
KEGG: bpe:BP3738 hypothetical protein.
    
   0.554
Xcel_0493
PFAM: cell divisionFtsK/SpoIIIE; SMART: Forkhead-associated protein; AAA ATPase; KEGG: bcb:BCB4264_A2089 FtsK/SpoIIIE family protein.
  
  0.460
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.