STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0874KEGG: ank:AnaeK_1628 hypothetical protein. (344 aa)    
Predicted Functional Partners:
Xcel_0873
KEGG: amc:MADE_01038 hypothetical protein.
       0.655
Xcel_2642
KEGG: acp:A2cp1_4312 DNA ligase I, ATP-dependent Dnl1; TIGRFAM: DNA ligase I, ATP-dependent Dnl1; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; DNA ligase domain protein; Belongs to the ATP-dependent DNA ligase family.
  
     0.590
Xcel_1674
PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: afw:Anae109_4038 ATP-dependent DNA ligase.
  
     0.586
Xcel_3276
KEGG: mrd:Mrad2831_1188 hypothetical protein.
  
     0.549
Xcel_0876
Hypothetical protein.
  
    0.522
Xcel_0875
KEGG: rfr:Rfer_0173 hypothetical protein.
       0.515
Xcel_3121
Hypothetical protein.
  
     0.496
Xcel_0493
PFAM: cell divisionFtsK/SpoIIIE; SMART: Forkhead-associated protein; AAA ATPase; KEGG: bcb:BCB4264_A2089 FtsK/SpoIIIE family protein.
 
 
 
 0.479
Xcel_0872
PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_B1762 major facilitator superfamily (MFS)transporter.
       0.469
Xcel_3020
KEGG: hypothetical protein.
  
    0.461
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.