STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0875KEGG: rfr:Rfer_0173 hypothetical protein. (110 aa)    
Predicted Functional Partners:
Xcel_0876
Hypothetical protein.
       0.773
Xcel_3191
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: acp:A2cp1_0462 exonuclease SbcC.
  
     0.680
Xcel_0277
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: acr:Acry_1166 triple helix repeat-containing collagen.
  
     0.672
Xcel_2416
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: GK17577 gene product from transcript GK17577- RA.
  
     0.662
Xcel_3196
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: gox:GOX1022 transcriptional regulator.
  
     0.575
Xcel_0877
KEGG: tgr:Tgr7_1062 sec-C motif domain protein; Belongs to the UPF0225 family.
       0.565
Xcel_0874
KEGG: ank:AnaeK_1628 hypothetical protein.
       0.515
Xcel_2776
PFAM: Patatin; KEGG: bpm:BURPS1710b_1675 patatin family phospholipase.
  
     0.505
Xcel_0872
PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_B1762 major facilitator superfamily (MFS)transporter.
 
     0.497
Xcel_0148
TIGRFAM: conserved repeat domain protein; KEGG: bcr:BCAH187_A3696 conserved repeat domain protein.
  
     0.486
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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