STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0885PFAM: protein of unknown function DUF718; KEGG: atc:AGR_L_2037 hypothetical protein. (118 aa)    
Predicted Functional Partners:
Xcel_0886
TIGRFAM: L-rhamnose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: acr:Acry_2987 L-rhamnose isomerase.
 
  
 0.981
Xcel_2655
PFAM: carbohydrate kinase FGGY; KEGG: sus:Acid_3424 carbohydrate kinase, FGGY.
 
  
 0.956
Xcel_0887
TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: class II aldolase/adducin family protein; short-chain dehydrogenase/reductase SDR; KEGG: sme:SMc02322 short chain dehydrogenase.
 
  
 0.953
Xcel_0884
TIGRFAM: rhamnose ABC transporter, periplasmic rhamnose-binding protein; KEGG: bxe:Bxe_B1038 ABC sugar transporter, periplasmic ligand binding protein.
 
    0.829
Xcel_0401
PFAM: carbohydrate kinase FGGY; KEGG: asu:Asuc_0493 carbohydrate kinase FGGY.
  
  
 0.731
Xcel_2828
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: pen:PSEEN1988 xylulokinase.
  
  
 0.731
Xcel_0882
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: bac:BamMC406_1213 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
    0.610
Xcel_0883
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: bac:BamMC406_1214 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
     0.596
Xcel_0049
PFAM: major facilitator superfamily MFS_1; KEGG: esa:ESA_02493 hypothetical protein.
  
  
 0.535
Xcel_0602
PFAM: major facilitator superfamily MFS_1; KEGG: sea:SeAg_B0904 inner membrane protein YbjJ.
  
  
 0.535
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.