STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0887TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: class II aldolase/adducin family protein; short-chain dehydrogenase/reductase SDR; KEGG: sme:SMc02322 short chain dehydrogenase. (684 aa)    
Predicted Functional Partners:
Xcel_0885
PFAM: protein of unknown function DUF718; KEGG: atc:AGR_L_2037 hypothetical protein.
 
  
 0.953
Xcel_0886
TIGRFAM: L-rhamnose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: acr:Acry_2987 L-rhamnose isomerase.
 
     0.937
Xcel_2655
PFAM: carbohydrate kinase FGGY; KEGG: sus:Acid_3424 carbohydrate kinase, FGGY.
 
 0.900
Xcel_0884
TIGRFAM: rhamnose ABC transporter, periplasmic rhamnose-binding protein; KEGG: bxe:Bxe_B1038 ABC sugar transporter, periplasmic ligand binding protein.
 
   
 0.803
Xcel_0888
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: smt:Smal_1050 transcriptional regulator, LacI family.
  
   0.657
Xcel_0426
PFAM: sulfatase; KEGG: pzu:PHZ_c0420 arylsulfatase.
  
 
 0.656
Xcel_3244
KEGG: ank:AnaeK_2924 hypothetical protein.
  
 
 0.628
Xcel_2767
PFAM: PfkB domain protein; KEGG: gbm:Gbem_3234 1-phosphofructokinase.
  
  
 0.591
Xcel_0882
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: bac:BamMC406_1213 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
    0.558
Xcel_0099
Hypothetical protein.
    
 0.531
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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