STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0892PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rde:RD1_0666 oxidoreductase, putative. (373 aa)    
Predicted Functional Partners:
Xcel_0891
PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: acr:Acry_0140 hypothetical protein.
  
    0.782
Xcel_0889
PFAM: protein of unknown function DUF162; KEGG: rme:Rmet_2448 protein of unknown function DUF162.
       0.773
Xcel_0890
TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162; KEGG: bcj:BCAL0851 putative iron-sulphur cluster containing protein.
       0.773
Xcel_2125
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: sus:Acid_5142 oxidoreductase domain- containing protein.
  
     0.757
Xcel_2033
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: psp:PSPPH_3186 Gfo/Idh/MocA family oxidoreductase.
  
     0.652
Xcel_2700
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: lch:Lcho_1398 glutamine--scyllo-inositol transaminase; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.631
Xcel_1373
PFAM: oxidoreductase domain protein; KEGG: probable myo-inositol dehydrogenase.
  
     0.608
Xcel_2397
PFAM: Xylose isomerase domain protein TIM barrel; AP endonuclease 2 domain protein; KEGG: vei:Veis_3268 xylose isomerase domain protein TIM barrel.
 
    0.562
Xcel_0895
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rle:RL0087 hypothetical protein.
 
    0.555
Xcel_0893
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mlo:mlr3057 3-ketoacyl-(acyl-carrier-protein) reductase.
  
    0.508
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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