STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0896PFAM: oxidoreductase domain protein; KEGG: atc:AGR_L_3386 hypothetical protein. (388 aa)    
Predicted Functional Partners:
Xcel_0895
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rle:RL0087 hypothetical protein.
 
    0.970
Xcel_0897
PFAM: extracellular solute-binding protein family 1; KEGG: atc:AGR_L_3389 sugar-binding protein homolog.
 
     0.733
Xcel_2657
PFAM: Oxidoreductase domain; oxidoreductase domain protein; KEGG: eca:ECA2209 putative oxidoreductase.
  
     0.639
Xcel_2537
PFAM: extracellular solute-binding protein family 1; KEGG: bsu:BSU06970 hypothetical protein.
  
     0.610
Xcel_0898
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3328 binding-protein-dependent transport systems inner membrane component.
 
     0.550
Xcel_1648
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: eca:ECA2140 putative oxidoreductase.
  
     0.514
Xcel_2700
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: lch:Lcho_1398 glutamine--scyllo-inositol transaminase; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.485
Xcel_0899
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc04137 putative transport system permease ABC transporter protein.
 
     0.483
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: dvl:Dvul_0888 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.479
Xcel_2397
PFAM: Xylose isomerase domain protein TIM barrel; AP endonuclease 2 domain protein; KEGG: vei:Veis_3268 xylose isomerase domain protein TIM barrel.
  
    0.470
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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