STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0897PFAM: extracellular solute-binding protein family 1; KEGG: atc:AGR_L_3389 sugar-binding protein homolog. (446 aa)    
Predicted Functional Partners:
Xcel_0898
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3328 binding-protein-dependent transport systems inner membrane component.
 
  0.992
Xcel_0899
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc04137 putative transport system permease ABC transporter protein.
 
 
 0.919
Xcel_2648
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc04136 putative transport system permease ABC transporter protein.
 
   0.855
Xcel_2535
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rlt:Rleg2_4016 binding-protein-dependent transport systems inner membrane component.
 
   0.852
Xcel_2536
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3327 binding-protein-dependent transport systems inner membrane component.
 
 
 0.814
Xcel_2649
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3327 binding-protein-dependent transport systems inner membrane component.
 
 
 0.810
Xcel_0895
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rle:RL0087 hypothetical protein.
 
    0.769
Xcel_0896
PFAM: oxidoreductase domain protein; KEGG: atc:AGR_L_3386 hypothetical protein.
 
     0.733
Xcel_2657
PFAM: Oxidoreductase domain; oxidoreductase domain protein; KEGG: eca:ECA2209 putative oxidoreductase.
  
     0.673
Xcel_1047
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lch:Lcho_3327 binding-protein-dependent transport systems inner membrane component.
  
 
 0.668
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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