Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Xcel_0899PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc04137 putative transport system permease ABC transporter protein. (308 aa)    
Predicted Functional Partners:
Xcel_0898
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3328 binding-protein-dependent transport systems inner membrane component.
   0.969
Xcel_0897
PFAM: extracellular solute-binding protein family 1; KEGG: atc:AGR_L_3389 sugar-binding protein homolog.
 
   0.917
Xcel_2535
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rlt:Rleg2_4016 binding-protein-dependent transport systems inner membrane component.
   0.872
Xcel_2648
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc04136 putative transport system permease ABC transporter protein.
 
   0.868
Xcel_1370
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: esa:ESA_02713 hypothetical protein.
 
   0.857
Xcel_0409
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bsu:BSU28740 integral membrane protein.
 
   0.851
Xcel_2755
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr3390 ABC transporter permease.
 
 
 0.848
Xcel_0064
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mca:MCA1942 sugar ABC transporter, permease protein.
 
 
 0.843
Xcel_2612
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1925 sugar transport system (permease).
   0.835
Xcel_2913
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rlt:Rleg2_4663 binding-protein-dependent transport systems inner membrane component.
 
   0.833
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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