STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0901PFAM: BioY protein; KEGG: mxa:MXAN_2207 BioY family protein. (208 aa)    
Predicted Functional Partners:
Xcel_3075
PFAM: cobalt transport protein; KEGG: rru:Rru_A3687 cobalt transport protein.
  
 0.977
Xcel_3074
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rru:Rru_A3688 ABC transporter component.
   
 0.967
Xcel_3071
PFAM: BioY protein; KEGG: BioY protein precursor; K03523 putative biotin biosynthesis protein BioY.
     
  0.900
Xcel_0900
KEGG: ret:RHE_CH02708 hypothetical protein.
       0.494
Xcel_0898
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3328 binding-protein-dependent transport systems inner membrane component.
       0.430
Xcel_0899
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc04137 putative transport system permease ABC transporter protein.
       0.430
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.