STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0905PFAM: UspA domain protein; KEGG: rfr:Rfer_1020 hypothetical protein. (130 aa)    
Predicted Functional Partners:
Xcel_0906
PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: eba:ebA4048 IclR family transciptional regulator.
       0.773
Xcel_0904
PFAM: Vitamin K epoxide reductase; SMART: Vitamin K epoxide reductase.
       0.661
Xcel_0722
KEGG: afw:Anae109_4254 hypothetical protein.
  
     0.586
Xcel_0908
PFAM: PfkB domain protein; KEGG: scl:sce5155 putative 2-dehydro-3- deoxygluconokinase.
  
    0.568
Xcel_0907
TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: rle:RL4162 keto-hydroxyglutarate- aldolase/keto-deoxy-phosphogluconate aldolase.
       0.561
Xcel_1932
PFAM: GCN5-related N-acetyltransferase; KEGG: dal:Dalk_1024 acetyl coenzyme A synthetase (ADP forming), alpha domain protein.
 
    0.484
Xcel_2491
TIGRFAM: anti-sigma factor; KEGG: mxa:MXAN_6460 hypothetical protein.
  
     0.448
Xcel_3181
TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; KEGG: azo:azo2292 methylated-DNA--[protein]- cysteine S-methyltransferase.
  
    0.447
Xcel_1507
PFAM: GCN5-related N-acetyltransferase; KEGG: mlo:mll4342 phosphinotricin acetyltransferase.
  
   
 0.437
Xcel_2550
KEGG: met:M446_5306 hypothetical protein.
  
   
 0.436
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.