STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0906PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: eba:ebA4048 IclR family transciptional regulator. (272 aa)    
Predicted Functional Partners:
Xcel_0082
KEGG: hypothetical protein; TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1.
  
    0.974
Xcel_0905
PFAM: UspA domain protein; KEGG: rfr:Rfer_1020 hypothetical protein.
       0.773
Xcel_0907
TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: rle:RL4162 keto-hydroxyglutarate- aldolase/keto-deoxy-phosphogluconate aldolase.
 
   
 0.750
Xcel_0908
PFAM: PfkB domain protein; KEGG: scl:sce5155 putative 2-dehydro-3- deoxygluconokinase.
 
   
 0.747
Xcel_2358
PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: cti:RALTA_B1874 putative transcriptional regulator, IclR.
  
     0.675
Xcel_0904
PFAM: Vitamin K epoxide reductase; SMART: Vitamin K epoxide reductase.
       0.661
Xcel_0375
PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: scl:sce0751 GntR family transcriptional regulator.
 
  
 0.600
Xcel_1463
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: atu:Atu3137 C4-dicarboxylate-binding protein.
 
     0.581
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
     0.558
Xcel_2477
Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: xau:Xaut_0040 GntR family transcriptional regulator.
  
  
 0.527
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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