STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0919PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SM_b21654 lactose uptake ABC transporter permease protein. (292 aa)    
Predicted Functional Partners:
Xcel_0918
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH2725 lactose transport system (permease).
 0.994
Xcel_0917
PFAM: extracellular solute-binding protein family 1; KEGG: smd:Smed_4136 extracellular solute-binding protein family 1.
 
 0.985
Xcel_0409
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bsu:BSU28740 integral membrane protein.
   0.869
Xcel_0920
PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta- sandwich; KEGG: bha:BH2723 beta-galactosidase.
 
     0.863
Xcel_2913
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rlt:Rleg2_4663 binding-protein-dependent transport systems inner membrane component.
 
 0.862
Xcel_2755
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr3390 ABC transporter permease.
 
 0.852
Xcel_1370
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: esa:ESA_02713 hypothetical protein.
 
   0.844
Xcel_2612
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1925 sugar transport system (permease).
 
 0.843
Xcel_0064
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mca:MCA1942 sugar ABC transporter, permease protein.
 
 0.823
Xcel_2115
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rlt:Rleg2_5336 binding-protein-dependent transport systems inner membrane component.
 
 0.818
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.