STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0936PFAM: carbonic anhydrase; KEGG: mno:Mnod_1487 carbonic anhydrase. (244 aa)    
Predicted Functional Partners:
Xcel_2086
PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; KEGG: wsu:WS0651 sulfate transporter sulfate transporter family protein.
  
 0.937
Xcel_3096
KEGG: pde:Pden_3937 transferase hexapeptide protein.
    
 
 0.924
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
       0.819
fumC
Fumarate lyase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
       0.718
Xcel_1862
PFAM: formate/nitrite transporter; KEGG: pde:Pden_4450 formate/nitrite transporter.
  
    0.710
Xcel_3094
PFAM: formate/nitrite transporter; KEGG: mpo:Mpop_3185 formate/nitrite transporter.
  
    0.710
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.694
Xcel_0365
PFAM: NAD-dependent epimerase/dehydratase; KEGG: sus:Acid_7076 NAD-dependent epimerase/dehydratase.
 
      0.658
Xcel_1720
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bcm:Bcenmc03_0488 HAD family hydrolase.
      
 0.620
Xcel_0938
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: afw:Anae109_0878 ABC transporter related.
       0.553
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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