STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0943PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bca:BCE_2589 ATP-binding transport protein NatA. (276 aa)    
Predicted Functional Partners:
Xcel_0944
KEGG: afw:Anae109_2050 hypothetical protein.
 
  
 0.949
Xcel_2950
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mlr7224 sugar ABC transportor, ATP- binding protein.
 
    
0.771
Xcel_2529
KEGG: aeh:Mlg_0732 glycine betaine/L-proline ABC transporter, ATPase subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; CBS domain containing protein; SMART: AAA ATPase.
 
     
0.757
Xcel_0105
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sit:TM1040_1274 ABC transporter related.
 
     
0.673
Xcel_2174
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3413 ABC Fe+3-siderophore transporter, ATPase subunit.
 
   
0.646
Xcel_0945
PFAM: pentapeptide repeat protein; KEGG: scl:sce2720 hypothetical protein.
       0.574
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.559
Xcel_0942
PFAM: protein of unknown function DUF195; KEGG: protein of unknown function DUF195; K09760 DNA recombination protein RmuC.
       0.536
Xcel_0947
KEGG: eba:ebA1561 plasmid maintenance system antidote protein; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
       0.476
Xcel_2644
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; KEGG: bpm:BURPS1710b_1102 putative lipoprotein.
  
     0.472
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.