STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0944KEGG: afw:Anae109_2050 hypothetical protein. (532 aa)    
Predicted Functional Partners:
Xcel_0943
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bca:BCE_2589 ATP-binding transport protein NatA.
 
  
 0.949
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.589
Xcel_0945
PFAM: pentapeptide repeat protein; KEGG: scl:sce2720 hypothetical protein.
  
    0.582
Xcel_0942
PFAM: protein of unknown function DUF195; KEGG: protein of unknown function DUF195; K09760 DNA recombination protein RmuC.
       0.546
Xcel_0708
Phage shock protein C, PspC; PFAM: PspC domain protein; KEGG: swi:Swit_2762 hypothetical protein.
 
    0.524
Xcel_1497
Hypothetical protein; KEGG: GK24882 gene product from transcript GK24882- RA.
  
     0.500
Xcel_2644
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; KEGG: bpm:BURPS1710b_1102 putative lipoprotein.
  
     0.491
Xcel_0947
KEGG: eba:ebA1561 plasmid maintenance system antidote protein; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
       0.476
Xcel_2645
Hypothetical protein.
  
     0.473
Xcel_2819
Hypothetical protein; KEGG: mch:Mchl_4744 putative superfamily I DNA and RNA helicase protein.
  
     0.467
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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