STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0949PFAM: HipA domain protein; KEGG: csa:Csal_0226 HipA-like protein. (414 aa)    
Predicted Functional Partners:
Xcel_0950
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: cak:Caul_0476 XRE family transcriptional regulator.
 
   0.967
Xcel_1225
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: xop:PXO_03585 transcriptional regulator.
   
 
 0.602
Xcel_1757
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: xac:XAC0188 transcriptional regulator.
   
 
 0.602
Xcel_2109
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bxe:Bxe_B2769 XRE family transcriptional regulator.
   
 
 0.602
Xcel_2883
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ccs:CCNA_00479 transcriptional regulatory protein.
   
 
 0.602
Xcel_3240
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sal:Sala_1613 XRE family transcriptional regulator.
   
 
 0.602
Xcel_0951
KEGG: sus:Acid_0961 hypothetical protein.
       0.523
Xcel_0933
PFAM: extracellular solute-binding protein family 5; KEGG: scl:sce7548 ABC-type dipeptide transport system, periplasmic component.
  
     0.500
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.