STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0974KEGG: hypothetical protein. (321 aa)    
Predicted Functional Partners:
dapD
Putative 2,3,4, 5-tetrahydropyridine-2- carboxylate N-succinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA.
       0.814
Xcel_0976
TIGRFAM: succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: scl:sce2952 dipeptidase.
 
     0.740
Xcel_1277
Hypothetical protein.
  
     0.689
rbpA
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.661
Xcel_2407
Hypothetical protein; KEGG: ank:AnaeK_0563 thermosensitive mutation transmembrane protein, SuhR.
  
     0.619
Xcel_3275
PFAM: penicillin-binding protein transpeptidase; KEGG: mxa:MXAN_7139 putative penicillin-binding protein.
 
 
 0.619
Xcel_1931
Hypothetical protein.
  
     0.601
Xcel_0977
PFAM: conserved hypothetical protein; KEGG: dal:Dalk_2693 hypothetical protein; Belongs to the LOG family.
   
   0.583
Xcel_1475
Hypothetical protein.
  
     0.577
Xcel_3000
PFAM: NLP/P60 protein; KEGG: bte:BTH_II0129 rhs element Vgr protein.
 
 
  
 0.554
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.