STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0986PFAM: ribonuclease BN; KEGG: mpt:Mpe_A0042 BrkB-like serum-resistance protein. (288 aa)    
Predicted Functional Partners:
Xcel_0985
PFAM: Phosphoesterase HXTX; KEGG: bcy:Bcer98_0945 hypothetical protein.
       0.646
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.639
Xcel_3364
Hypothetical protein; KEGG: GH15499 gene product from transcript GH15499- RA.
  
     0.620
Xcel_1661
Hypothetical protein.
 
     0.558
Xcel_2184
Hypothetical protein; KEGG: sus:Acid_5430 peptidase S9 prolyl oligopeptidase.
 
    0.509
Xcel_3029
Domain of unknown function DUF1794; May play a role in the intracellular transport of hydrophobic ligands.
  
     0.504
Xcel_0783
PFAM: aminoglycoside phosphotransferase; KEGG: eum:ECUMN_4827 macrolide 2'- phosphotransferase I.
  
     0.500
Xcel_1186
Hypothetical protein.
 
     0.499
Xcel_0983
KEGG: acp:A2cp1_0077 sec-independent translocation protein MttA/Hcf106.
 
     0.496
Xcel_0010
KEGG: Hypothetical protein CBG04830.
  
     0.489
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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