STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0994PFAM: basic membrane lipoprotein; KEGG: mxa:MXAN_5711 lipoprotein, BMP family. (360 aa)    
Predicted Functional Partners:
Xcel_0995
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce7755 sugar ABC transporter, ATP- binding protein.
 
 
 0.994
Xcel_0997
PFAM: inner-membrane translocator; KEGG: scl:sce7756 uncharacterized ABC-type transport system,permease component.
 
 
 0.991
Xcel_0996
PFAM: inner-membrane translocator; KEGG: scl:sce7757 ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.987
Xcel_0999
KEGG: mxa:MXAN_5710 pyrimidine-nucleoside phosphorylase; TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: Pyrimidine nucleoside phosphorylase domain; glycosyl transferase family 3; Glycosyl transferase, family 3-like.
 
   
 0.684
Xcel_0998
TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; KEGG: scl:sce5863 putative cytidine deaminase.
 
   
 0.665
Xcel_0992
Mannose-1-phosphate guanylyltransferase (GDP); PFAM: Nucleotidyl transferase; KEGG: hypothetical protein.
       0.595
Xcel_0993
Amidohydrolase; KEGG: bsu:BSU29290 hypothetical protein; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein.
       0.582
Xcel_1000
KEGG: hypothetical protein.
       0.501
Xcel_3091
PFAM: 5'-Nucleotidase domain protein; metallophosphoesterase; nucleic acid binding OB-fold tRNA/helicase-type; Endonuclease/exonuclease/phosphatase; Carbohydrate-binding family V/XII; SMART: Carbohydrate-binding family V/XII; KEGG: rpb:RPB_0803 5'-nucleotidase.
 
  
 0.477
Xcel_0989
KEGG: eta:ETA_23070 succinate dehydrogenase hydrophobic membrane anchor protein.
       0.422
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.