STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0997PFAM: inner-membrane translocator; KEGG: scl:sce7756 uncharacterized ABC-type transport system,permease component. (429 aa)    
Predicted Functional Partners:
Xcel_0995
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce7755 sugar ABC transporter, ATP- binding protein.
 
 0.997
Xcel_0996
PFAM: inner-membrane translocator; KEGG: scl:sce7757 ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
 
0.994
Xcel_0994
PFAM: basic membrane lipoprotein; KEGG: mxa:MXAN_5711 lipoprotein, BMP family.
 
 
 0.991
Xcel_0998
TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; KEGG: scl:sce5863 putative cytidine deaminase.
  
  
 0.834
Xcel_0999
KEGG: mxa:MXAN_5710 pyrimidine-nucleoside phosphorylase; TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: Pyrimidine nucleoside phosphorylase domain; glycosyl transferase family 3; Glycosyl transferase, family 3-like.
     
 0.827
Xcel_1000
KEGG: hypothetical protein.
       0.799
rbsA
ABC transporter related protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
     0.562
Xcel_0420
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bpy:Bphyt_4809 ABC transporter related.
     0.549
Xcel_2401
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bch:Bcen2424_5039 ABC transporter related.
     0.548
Xcel_1001
Hypothetical protein.
       0.463
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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