Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
Xcel_1024PFAM: protein of unknown function DUF159; KEGG: rru:Rru_A3713 hypothetical protein; Belongs to the SOS response-associated peptidase family. (253 aa)    
Predicted Functional Partners:
xerC
Integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
   
    0.675
Xcel_1744
PFAM: integrase family protein; KEGG: ade:Adeh_2695 tyrosine recombinase XerC; Belongs to the 'phage' integrase family.
   
    0.675
Xcel_1025
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: bsu:BSU35840 hypothetical protein.
       0.546
Xcel_0597
PFAM: integrase family protein; KEGG: met:M446_3878 integrase family protein; Belongs to the 'phage' integrase family.
   
    0.435
Xcel_0795
PFAM: integrase family protein; KEGG: bat:BAS3836 prophage LambdaBa02, site- specific recombinase phage integrase family protein protein; Belongs to the 'phage' integrase family.
   
    0.435
xerD
Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
   
    0.435
Xcel_1569
PFAM: integrase family protein; KEGG: bcy:Bcer98_2627 phage integrase family protein; Belongs to the 'phage' integrase family.
   
    0.435
Xcel_1579
PFAM: integrase family protein; KEGG: hha:Hhal_1202 tyrosine recombinase XerC.
   
    0.435
Xcel_2060
Hypothetical protein; KEGG: bps:BPSL3344 putative bacteriophage integrase.
   
    0.435
Xcel_2073
PFAM: integrase family protein; KEGG: met:M446_3878 integrase family protein; Belongs to the 'phage' integrase family.
   
    0.435
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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