STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1033PFAM: type II secretion system protein E; KEGG: bpt:Bpet2078 putative general secretion pathway ATPase. (418 aa)    
Predicted Functional Partners:
Xcel_1032
PFAM: type II secretion system protein; KEGG: bav:BAV2284 pilus assembly protein.
  
 0.981
Xcel_1031
PFAM: type II secretion system protein; KEGG: rsq:Rsph17025_0300 type II secretion system protein.
 
  
 0.971
Xcel_1029
PFAM: TadE family protein; KEGG: bam:Bamb_6296 TadE family protein.
 
    0.896
Xcel_1030
Hypothetical protein.
 
     0.867
Xcel_1028
PFAM: TadE family protein; KEGG: dvl:Dvul_0051 TadE family protein.
 
     0.857
Xcel_1027
PFAM: aminotransferase class I and II; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mxa:MXAN_3751 aminotransferase, classes I and II.
       0.682
Xcel_0325
KEGG: ank:AnaeK_3451 hypothetical protein.
  
  
 0.539
Xcel_0326
PFAM: type II secretion system protein; KEGG: mno:Mnod_2571 type II secretion system protein.
  
  
 0.539
Xcel_2500
Hypothetical protein.
 
    0.530
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
       0.529
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.