STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1043KEGG: mch:Mchl_1715 hypothetical protein. (320 aa)    
Predicted Functional Partners:
Xcel_1045
PFAM: extracellular solute-binding protein family 1; KEGG: scl:sce0764 putative sugar binding ABC transporter protein.
 
     0.589
Xcel_1044
PFAM: ROK family protein; KEGG: cvi:CV_2895 transcriptional regulator protein.
       0.518
Xcel_1041
PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: sat:SYN_02636 electron transfer flavoprotein beta-subunit.
       0.497
Xcel_1042
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: pmy:Pmen_0898 acyl-CoA dehydrogenase domain- containing protein.
       0.497
Xcel_1039
Hypothetical protein; KEGG: mxa:MXAN_5219 oxidoreductase, molybdopterin- binding.
       0.482
Xcel_1040
PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: rce:RC1_4109 electron transfer flavoprotein, alpha subunit.
       0.482
Xcel_3019
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: xau:Xaut_1595 ECF subfamily RNA polymerase sigma-24 factor.
 
   0.463
Xcel_0335
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: rce:RC1_3903 RNA polymerase sigma-70 factor, ECF family protein.
 
   0.443
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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