STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1044PFAM: ROK family protein; KEGG: cvi:CV_2895 transcriptional regulator protein. (383 aa)    
Predicted Functional Partners:
Xcel_1045
PFAM: extracellular solute-binding protein family 1; KEGG: scl:sce0764 putative sugar binding ABC transporter protein.
    0.881
Xcel_1048
PFAM: ROK family protein; KEGG: glo:Glov_1263 ROK family protein.
 
    
0.692
Xcel_1046
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa0710 ABC transporter, permease.
 
     0.653
Xcel_1047
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lch:Lcho_3327 binding-protein-dependent transport systems inner membrane component.
 
     0.630
nagB
Glucosamine-6-phosphate isomerase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion; Belongs to the glucosamine/galactosamine-6-phosphate isomerase family. NagB subfamily.
    
 0.617
Xcel_1043
KEGG: mch:Mchl_1715 hypothetical protein.
       0.518
Xcel_1099
PFAM: phosphotransferase system PTS EIIB protein; KEGG: bmj:BMULJ_02774 PTS system N- acetylglucosamine-specific IIB component.
  
 
 0.500
Xcel_1050
Hypothetical protein.
       0.445
Xcel_1051
PFAM: type III restriction protein res subunit; SMART: DEAD-like helicase; KEGG: sde:Sde_1925 GGDEF family protein.
       0.445
Xcel_2828
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: pen:PSEEN1988 xylulokinase.
  
  
 0.400
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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