STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1045PFAM: extracellular solute-binding protein family 1; KEGG: scl:sce0764 putative sugar binding ABC transporter protein. (488 aa)    
Predicted Functional Partners:
Xcel_1046
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa0710 ABC transporter, permease.
 
 0.991
Xcel_1047
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lch:Lcho_3327 binding-protein-dependent transport systems inner membrane component.
 
 0.989
Xcel_2950
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mlr7224 sugar ABC transportor, ATP- binding protein.
  
 0.901
Xcel_1044
PFAM: ROK family protein; KEGG: cvi:CV_2895 transcriptional regulator protein.
    0.881
Xcel_2612
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1925 sugar transport system (permease).
 
   0.630
Xcel_1048
PFAM: ROK family protein; KEGG: glo:Glov_1263 ROK family protein.
  
    0.619
nagB
Glucosamine-6-phosphate isomerase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion; Belongs to the glucosamine/galactosamine-6-phosphate isomerase family. NagB subfamily.
       0.619
Xcel_1043
KEGG: mch:Mchl_1715 hypothetical protein.
 
     0.589
Xcel_1109
Hypothetical protein; KEGG: GK10816 gene product from transcript GK10816- RA.
  
     0.585
Xcel_1369
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sit:TM1040_3397 binding-protein-dependent transport systems inner membrane component.
  
 
 0.561
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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