STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1078PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: ABC transporter substrate binding protein (proline/glycine/betaine). (341 aa)    
Predicted Functional Partners:
Xcel_1079
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: proW; proline/glycine betaine ABC transporter; K05846 osmoprotectant transport system permease protein.
 
 0.997
Xcel_1081
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cko:CKO_02929 hypothetical protein.
 0.996
Xcel_1080
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: scl:sce7071 putative ABC-transporter.
 
 
 0.995
Xcel_0767
Hypothetical protein; KEGG: GI17572 gene product from transcript GI17572- RA.
  
    0.762
Xcel_3121
Hypothetical protein.
  
     0.654
Xcel_2924
Hypothetical protein.
  
     0.644
Xcel_1915
Hypothetical protein.
  
     0.617
Xcel_2949
TIGRFAM: trehalose-phosphatase; PFAM: glycosyl transferase family 20; trehalose- phosphatase; KEGG: scl:sce0488 Alpha,alpha-trehalose-phosphate synthase (UDP-forming).
   
  
 0.519
Xcel_2531
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: mxa:MXAN_2251 glycine betaine/L-proline ABC transporter,periplasmic substrate-binding protein.
   
 
 0.462
Xcel_0040
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: mpo:Mpop_4845 endonuclease/exonuclease/phosphatase.
  
    0.459
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.