STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1081PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cko:CKO_02929 hypothetical protein. (323 aa)    
Predicted Functional Partners:
Xcel_1078
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: ABC transporter substrate binding protein (proline/glycine/betaine).
 0.996
Xcel_1080
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: scl:sce7071 putative ABC-transporter.
 0.996
Xcel_1079
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: proW; proline/glycine betaine ABC transporter; K05846 osmoprotectant transport system permease protein.
 0.995
Xcel_1431
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: scl:sce5644 carbohydrate ABC transporter.
 
     
0.900
Xcel_2809
NifC-like ABC-type porter; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
      0.883
Xcel_1082
KEGG: mxa:MXAN_0885 hypothetical protein.
       0.757
Xcel_3150
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: binding-protein-dependent transport systems inner membrane component.
 
      0.651
Xcel_1493
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: oan:Oant_3334 ABC transporter related.
 
     
0.635
Xcel_0698
PFAM: ABC transporter transmembrane region; ABC transporter related; KEGG: mrd:Mrad2831_5367 lipid ABC transporter ATPase/inner membrane protein.
 
      0.613
Xcel_2530
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pmy:Pmen_0486 binding-protein-dependent transport systems inner membrane component.
 
  
 0.577
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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