STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1094Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bvi:Bcep1808_4394 GntR family transcriptional regulator. (132 aa)    
Predicted Functional Partners:
Xcel_1093
KEGG: hypothetical protein.
       0.773
Xcel_2226
PFAM: iron dependent repressor; regulatory protein GntR HTH; FeoA family protein; SMART: iron dependent repressor; KEGG: tcx:Tcr_0904 iron dependent repressor.
   
    0.553
Xcel_1092
Hypothetical protein.
       0.546
Xcel_3012
Transcriptional regulator, GntR family with aminotransferase domain; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: mrd:Mrad2831_0661 transcriptional regulator.
  
     0.522
Xcel_2242
TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; KEGG: oriC; transcriptional regulator LysR family; K05596 LysR family transcriptional regulator, chromosome initiation inhibitor.
   
    0.497
Xcel_2171
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: mxa:MXAN_3702 transcriptional regulator, Fur family; Belongs to the Fur family.
   
  
 0.496
cobB
Silent information regulator protein Sir2; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
  
    0.492
Xcel_1095
PFAM: thioesterase superfamily protein; KEGG: xcb:XC_3095 hypothetical protein.
       0.468
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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