STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1109Hypothetical protein; KEGG: GK10816 gene product from transcript GK10816- RA. (333 aa)    
Predicted Functional Partners:
Xcel_1110
TIGRFAM: serine O-acetyltransferase; KEGG: mca:MCA2611 serine acetyltransferase.
       0.723
Xcel_1111
TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: acr:Acry_2560 cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family.
       0.657
Xcel_1045
PFAM: extracellular solute-binding protein family 1; KEGG: scl:sce0764 putative sugar binding ABC transporter protein.
  
     0.585
Xcel_1413
KEGG: bpe:BP3738 hypothetical protein.
  
     0.558
Xcel_3007
KEGG: fibrocystin-L-like protein.
  
     0.551
Xcel_0206
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: Muc19; mucin 19; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.544
Xcel_1108
PFAM: Luciferase-like monooxygenase; KEGG: pzu:PHZ_c2545 5,10- methylenetetrahydromethanopterin reductase.
       0.501
Xcel_1653
Hypothetical protein.
  
     0.474
Xcel_1652
Hypothetical protein.
  
     0.455
Xcel_2547
KEGG: hypothetical protein.
  
     0.430
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.