STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1117KEGG: eli:ELI_11625 hypothetical protein. (104 aa)    
Predicted Functional Partners:
Xcel_0617
PFAM: Tetratricopeptide TPR_4; KEGG: scl:sce6745 hypothetical protein.
  
     0.673
Xcel_1116
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rle:RL3033 hypothetical protein.
       0.631
Xcel_3244
KEGG: ank:AnaeK_2924 hypothetical protein.
  
     0.615
Xcel_0615
Hypothetical protein.
  
     0.613
Xcel_0616
KEGG: hypothetical protein.
  
     0.612
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
       0.475
Xcel_0614
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: met:M446_5053 ECF subfamily RNA polymerase sigma-24 factor.
  
     0.464
Xcel_1936
PFAM: YhhN family protein; KEGG: bvi:Bcep1808_5200 YhhN family protein.
  
     0.429
Xcel_0205
Hypothetical protein.
  
     0.415
Xcel_1430
PFAM: regulatory protein TetR; KEGG: scl:sce5643 TetR family transcriptional regulator.
  
     0.403
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.