STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1130PFAM: Luciferase-like monooxygenase; KEGG: sme:SM_b20100 putative dehydrogenase protein. (332 aa)    
Predicted Functional Partners:
Xcel_1131
TIGRFAM: F420-dependent oxidoreductase; PFAM: protein of unknown function DUF129; KEGG: bpy:Bphyt_4255 F420-dependent oxidoreductase.
 
   
 0.947
Xcel_1324
Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein; KEGG: mrd:Mrad2831_5869 alkanesulfonate monooxygenase.
  
     0.759
Xcel_0669
PFAM: Luciferase-like monooxygenase; KEGG: rpb:RPB_4411 luciferase-like.
  
     0.741
Xcel_3009
TIGRFAM: LPPG domain protein containing protein; PFAM: protein of unknown function UPF0052 and CofD; KEGG: eba:p2A344 LPPG:FO 2-phospho-L-lactate transferase.
 
   
 0.705
Xcel_0376
PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; Luciferase-like monooxygenase; KEGG: pol:Bpro_1407 FAD linked oxidase-like.
 
     0.660
Xcel_1614
Hypothetical protein.
  
     0.603
Xcel_1108
PFAM: Luciferase-like monooxygenase; KEGG: pzu:PHZ_c2545 5,10- methylenetetrahydromethanopterin reductase.
  
     0.595
Xcel_1132
PFAM: protein of unknown function DUF125 transmembrane; KEGG: nodulin, putative.
       0.584
Xcel_2353
Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein; KEGG: smt:Smal_3622 luciferase-like monooxygenase.
  
     0.536
Xcel_3010
PFAM: protein of unknown function DUF121; KEGG: swi:Swit_0413 hypothetical protein.
 
   
 0.523
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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