STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1166PFAM: amidohydrolase; KEGG: hne:HNE_0934 amidohydrolase family protein. (373 aa)    
Predicted Functional Partners:
ffh
Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.
      0.860
Xcel_1611
PFAM: N-formylglutamate amidohydrolase; KEGG: sil:SPO3282 N-formylglutamate amidohydrolase family protein.
  
  
 0.748
rpsP
TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: sal:Sala_2727 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
       0.547
Xcel_1168
RNA-binding protein (KH domain); KEGG: bha:BH2482 hypothetical protein; Belongs to the UPF0109 family.
       0.547
Xcel_1164
UTP-GlnB uridylyltransferase, GlnD; PFAM: GlnD PII-uridylyltransferase; metal-dependent phosphohydrolase HD sub domain; DNA polymerase beta domain protein region; protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: ade:Adeh_1692 metal dependent phosphohydrolase.
       0.543
Xcel_2007
Response regulator receiver protein; KEGG: bph:Bphy_0469 two component transcriptional regulator.
  
     0.500
Xcel_1776
PFAM: Amidohydrolase 3; KEGG: mxa:MXAN_0659 putative lipoprotein.
  
     0.481
Xcel_1162
TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: dal:Dalk_5098 ammonium transporter.
       0.459
Xcel_1163
PFAM: nitrogen regulatory protein P-II; KEGG: dal:Dalk_5099 nitrogen regulatory protein P- II; Belongs to the P(II) protein family.
       0.459
rimM
16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
       0.415
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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