STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1177TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: pde:Pden_4323 DNA protecting protein DprA. (402 aa)    
Predicted Functional Partners:
Xcel_1176
Mg chelatase, subunit ChlI; KEGG: azo:azo3736 hypothetical protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; SMART: AAA ATPase.
 
 0.978
Xcel_1175
PFAM: protein of unknown function UPF0102; KEGG: dds:Ddes_1792 protein of unknown function UPF0102; Belongs to the UPF0102 family.
 
    0.911
Xcel_2210
TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase domain protein; KEGG: scl:sce8316 competence protein.
 
  
 0.875
xerC
Integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
 
   
 0.749
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
   
 0.745
Xcel_1305
KEGG: maq:Maqu_0559 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: helicase domain protein; DEAD-like helicase.
  
 
 0.730
Xcel_2508
KEGG: hha:Hhal_0964 competence protein F.
 
 
 0.718
Xcel_3140
Protein serine/threonine phosphatase; PFAM: Stage II sporulation E family protein; ATP- binding region ATPase domain protein; SMART: protein phosphatase 2C domain protein; PAC repeat-containing protein; KEGG: gme:Gmet_2818 putative PAS/PAC sensor protein.
  
    0.685
Xcel_1173
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
 
    0.672
Xcel_1172
TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: dps:DP0107 signal peptidase I; Belongs to the peptidase S26 family.
 
     0.657
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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