STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerCIntegrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (329 aa)    
Predicted Functional Partners:
Xcel_1177
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: pde:Pden_4323 DNA protecting protein DprA.
 
   
 0.749
Xcel_1234
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: bcb:BCB4264_A3893 stage III sporulation protein E.
  
   
 0.723
Xcel_0968
PFAM: Prephenate dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; UDP- glucose/GDP-mannose dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: hha:Hhal_0566 prephenate dehydrogenase.
  
    0.696
Xcel_2508
KEGG: hha:Hhal_0964 competence protein F.
   
    0.692
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.691
Xcel_1024
PFAM: protein of unknown function DUF159; KEGG: rru:Rru_A3713 hypothetical protein; Belongs to the SOS response-associated peptidase family.
   
    0.686
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
  
    0.686
Xcel_1175
PFAM: protein of unknown function UPF0102; KEGG: dds:Ddes_1792 protein of unknown function UPF0102; Belongs to the UPF0102 family.
       0.665
Xcel_1176
Mg chelatase, subunit ChlI; KEGG: azo:azo3736 hypothetical protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; SMART: AAA ATPase.
       0.665
Xcel_3372
parB-like partition protein; KEGG: bha:BH4057 stage 0 sporulation protein J; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; Belongs to the ParB family.
  
  
 0.614
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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