STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1179PFAM: Peptidase M23; KEGG: rce:RC1_1037 peptidoglycan-binding LysM. (193 aa)    
Predicted Functional Partners:
Xcel_2220
Conserved hypothetical protein; KEGG: xca:xccb100_4377 putative ATP-binding protein.
  
   0.832
Xcel_2221
KEGG: xop:PXO_03538 hypothetical protein.
   
   0.830
Xcel_1036
Cell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
   
 
 0.793
Xcel_1290
PFAM: protein of unknown function YGGT; KEGG: bbk:BARBAKC583_0327 YGGT family protein.
 
 
   0.608
Xcel_1037
PFAM: Peptidase M23; KEGG: bha:BH3600 cell wall-binding protein.
    
 0.585
Xcel_1337
KEGG: dvl:Dvul_2077 hypothetical protein.
 
  
 0.576
Xcel_0979
Hypothetical protein.
  
     0.498
Xcel_2943
Hypothetical protein.
  
     0.432
Xcel_0005
PFAM: protein of unknown function DUF721; KEGG: protein of unknown function DUF721.
  
     0.430
Xcel_2508
KEGG: hha:Hhal_0964 competence protein F.
 
 
   0.427
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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