STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1187PFAM: protein of unknown function DUF624; KEGG: hypothetical protein. (214 aa)    
Predicted Functional Partners:
Xcel_1188
PFAM: extracellular solute-binding protein family 1; KEGG: hypothetical protein.
 
    0.779
Xcel_1189
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1912 transmembrane lipoprotein.
 
    0.731
rlmN
Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
       0.727
Xcel_1186
Hypothetical protein.
       0.727
Xcel_1190
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1911 transmembrane lipoprotein.
 
    0.706
frr
Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.
       0.698
Xcel_1184
PFAM: phosphatidate cytidylyltransferase; KEGG: rce:RC1_1203 phosphatidate cytidylyltransferase; Belongs to the CDS family.
       0.698
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
       0.661
Xcel_0462
KEGG: hypothetical protein.
  
     0.565
Xcel_3284
KEGG: rlt:Rleg2_1526 hypothetical protein.
  
     0.555
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.