STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1189PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1912 transmembrane lipoprotein. (314 aa)    
Predicted Functional Partners:
Xcel_1190
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1911 transmembrane lipoprotein.
 
  0.991
Xcel_1188
PFAM: extracellular solute-binding protein family 1; KEGG: hypothetical protein.
 
  0.989
Xcel_0367
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_3564 AlgM1, putative multiple sugar transport system permease protein.
 
  0.964
Xcel_2660
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_3564 AlgM1, putative multiple sugar transport system permease protein.
 
  0.964
Xcel_2785
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH2112 transmembrane lipoprotein.
 
  0.964
Xcel_2784
PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH2111 hypothetical protein.
 
  0.945
Xcel_0369
PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH0482 lipoprotein.
  
  0.930
Xcel_2662
KEGG: bha:BH0482 lipoprotein.
  
  0.925
Xcel_0918
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH2725 lactose transport system (permease).
 
 
 0.788
Xcel_0409
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bsu:BSU28740 integral membrane protein.
 
   0.766
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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