STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1193Beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein; KEGG: bha:BH3701 beta-galactosidase. (684 aa)    
Predicted Functional Partners:
Xcel_0260
PFAM: glycoside hydrolase clan GH-D; KEGG: esa:ESA_03854 hypothetical protein.
 
  
 0.963
Xcel_2118
PFAM: glycoside hydrolase clan GH-D; KEGG: kpn:KPN_04203 putative glycoprotein.
 
  
 0.961
Xcel_2915
PFAM: glycoside hydrolase clan GH-D; KEGG: hypothetical protein.
 
  
 0.931
Xcel_0920
PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta- sandwich; KEGG: bha:BH2723 beta-galactosidase.
 
 
 0.927
Xcel_2489
PFAM: Aldose 1-epimerase; KEGG: esa:ESA_04055 hypothetical protein.
  
 
 0.912
Xcel_2151
Beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein; KEGG: bha:BH3701 beta-galactosidase.
  
  
 
0.910
Xcel_1194
PFAM: glycoside hydrolase family 31; KEGG: esa:ESA_04154 alpha-xylosidase YicI; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.893
Xcel_1195
Beta-glucosidase; PFAM: glycoside hydrolase family 3 domain protein; KEGG: bha:BH1908 glucan 1,4-beta-glucosidase.
 
   
 0.821
Xcel_1192
KEGG: bha:BH0842 hypothetical protein.
       0.584
Xcel_2863
PFAM: Ankyrin; SMART: Ankyrin; KEGG: sfu:Sfum_1848 ankyrin.
   
 0.555
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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