STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1198Hypothetical protein; KEGG: bpd:BURPS668_A0869 LasA protease precursor. (272 aa)    
Predicted Functional Partners:
Xcel_2776
PFAM: Patatin; KEGG: bpm:BURPS1710b_1675 patatin family phospholipase.
  
     0.653
Xcel_1199
Hypothetical protein.
 
     0.564
Xcel_0206
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: Muc19; mucin 19; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.530
Xcel_3193
KEGG: bcb:BCB4264_A4969 hypothetical protein.
  
     0.526
Xcel_0462
KEGG: hypothetical protein.
  
     0.454
Xcel_2212
Hypothetical protein.
  
     0.438
Xcel_0461
Hypothetical protein.
  
     0.437
Xcel_0205
Hypothetical protein.
  
     0.423
Xcel_1430
PFAM: regulatory protein TetR; KEGG: scl:sce5643 TetR family transcriptional regulator.
  
     0.400
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.